trinityrnaseq
https://github.com/trinityrnaseq/trinityrnaseq
Perl
Trinity RNA-Seq de novo transcriptome assembly
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Perl not yet supported1 Subscribers
Add a CodeTriage badge to trinityrnaseq
Help out
- Issues
- Chrysalis Bowtie2/samtools step fails with [E::bam_hdr_write] Header too long for BAM format on very large de novo assembly
- Low Busco score with supertranscripts
- Parafly very slow even at HPC
- Trinity Process Got Killed at Insilico Normalization.pl step - 12 samples
- Trinity not running (huge data in tmp_normalized_read)
- abundance_estimates_to_matrix.pl fails with "cannot open file" error for Salmon quant.sf files
- compilation error
- Transcriptome larger than genome
- ERROR, no butterfly assemblies reported. Perhaps there were too few reads to assemble anything?
- TMM normalization
- Docs
- Perl not yet supported