quast
https://github.com/ablab/quast
AMPL
Genome assembly evaluation tool
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- Issues
- unknown error while running QUAST on mac
- Qutils reformatting and optimization
- Different # total reads for same fastq file
- Impossible to analyse multiple contig files on Python>=3.8
- download icarus consensus sequence
- ImportError: No module named joblib2 ERROR! exception caught!
- BUSCO problem: 100% Missing BUSCOs
- QUAST storing sam, bam, sorted.bam
- QUAST ignoring bam files
- Error while creating circos plot
- Docs
- AMPL not yet supported