augur
https://github.com/nextstrain/augur
Python
Pipeline components for real-time phylodynamic analysis
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Help out
- Issues
- augur export prefers num_date over numdate exported by augur refine
- Create a guide for contributing code to augur
- Thoughts on JSON schema spec for multi-colorby
- Frequencies JSON spec
- Improve performance of CLI start
- Feature request: Command to convert .json to .nwk
- command proposal to stitch together multiple trees
- Docs
- Python not yet supported