augur
https://github.com/nextstrain/augur
Python
Pipeline components for real-time phylodynamic analysis
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported38 Subscribers
Add a CodeTriage badge to augur
Help out
- Issues
- Document file formats
- Start and end date of augur build intervals are not stored in auspice JSONs
- Make Sequence Traits work with Fasta Input
- Store titer records in TiterRecord class and export in structured JSON format
- Representation of uncertainty in JSONs
- Improve help text of CLI command descriptions
- augur export prefers num_date over numdate exported by augur refine
- Thoughts on JSON schema spec for multi-colorby
- Frequencies JSON spec
- Improve startup time
- Docs
- Python not yet supported