augur
https://github.com/nextstrain/augur
Python
Pipeline components for real-time phylodynamic analysis
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported38 Subscribers
Add a CodeTriage badge to augur
Help out
- Issues
- Consider XXXX-XX-XX as missing date
- augur align: inserted Ns are reported incorrectly
- align: Improve handling of duplicate reference sequence
- Unhandled error in `curate apply-geolocation-rules`
- Improve error handling in `curate apply-geolocation-rules`
- fix: When JSON dump with sort_key fails, retry without sorting
- augur clades inheritance doesn't enforce inheritance
- Allow passing arguments to augur align
- read-file is slow with concurrent runs
- Address general type issues
- Docs
- Python not yet supported