augur
https://github.com/nextstrain/augur
Python
Pipeline components for real-time phylodynamic analysis
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported38 Subscribers
Add a CodeTriage badge to augur
Help out
- Issues
- docs: Fix numpy types for Python 3.12
- io/metadata: increase `csv.field_size_limit`
- [export] Allow warning text in auspice-config JSON
- refine: simplify node data JSON output
- tests: Cram to Prysk
- Write alignment file in temporary directory
- Config based Augur commands
- [refine] ? allow substitution model selection
- is there a way to give protein sites non-sequential numbering?
- multiple inputs: include source attribution
- Docs
- Python not yet supported