ncov
https://github.com/nextstrain/ncov
Python
Nextstrain build for novel coronavirus (nCoV)
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- Issues
- feat: use nightly nextclade tree
- Add a map of Nextstrain clade to Pango lineage
- Highlight currently circulating viruses
- Improve / standardize the way that we pass through default parameters and build-specific parameters
- Demo prefilter rule for Nextstrain GISAID build
- representation of a nuc conversion do not point a conversion on the genome
- Introduce minimum augur version check
- can't install to native
- after skip_diagnostics: true modification. next strain fails
- Discussion: Do we still need the `snp_clusters` param for `diagnostics` rule?
- Docs
- Python not yet supported