ncov
https://github.com/nextstrain/ncov
Python
Nextstrain build for novel coronavirus (nCoV)
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Help out
- Issues
- Properly handle CSV-like TSVs
- Add a map of Nextstrain clade to Pango lineage
- Use weighted sampling
- Improve / standardize the way that we pass through default parameters and build-specific parameters
- Demo prefilter rule for Nextstrain GISAID build
- Define workflow dependencies
- Rename `master` to `main`
- inline root sequence
- Port CI to `pathogen-repo-ci` GH Action workflow
- representation of a nuc conversion do not point a conversion on the genome
- Docs
- Python not yet supported