ncov
https://github.com/nextstrain/ncov
Python
Nextstrain build for novel coronavirus (nCoV)
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- Issues
- Error: Tree building failed
- Update ncov workflow diagram in documentation
- Implement subsampling via a script
- augur refine crashes when the root sequence is not included in the build
- Exit with an error when user requests an undefined subsampling scheme
- Left join multiple metadata files for the same named input
- Default run doesn't work
- Validate metadata inputs
- Refactoring and Optimization
- Frequency chart shows dates well past the dates shown in the page header and metadata download
- Docs
- Python not yet supported