gsva
https://github.com/rcastelo/gsva
R
Gene set variation analysis for microarray and RNA-seq data
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
R not yet supported3 Subscribers
Add a CodeTriage badge to gsva
Help out
- Issues
- Load GMT files dealing duplicated gene sets
- reconsider S4 class hierarchy
- Support for spatial transcriptomics data
- Running GSVA without kernel density estimation on a dgCMatrix coerces to a dense matrix
- Unit tests for annotation features
- Update GSVA vignette
- Use of the SingleCellExperiment container
- Use of the dgCMatrix container
- GSVA() parallelization over multiple node
- Speed up ssGSEA and reduce memory by moving .fastRndWalk to C++
- Docs
- R not yet supported