scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- perf: chan's parallel mean-var algorithm for dask
- perf: single-pass _sparse_nanmean (#1894)
- Download dataset files atomically to avoid corrupt cache (#4097)
- Integration Testing CI Test Failure on python 3.14 with prerelease dependencies
- ci: pre-commit autoupdate
- fix(experimental.pp.hvg): scope per-batch clip threshold in pearson_residuals HVG
- fix: anchor sc.pl.scatter colorbar to user-supplied ax
- feat: allow precomputed connectivities in neighbors
- Investigate our neighbors algorithm choice
- feat(plotting): add `ncols` to wrap multi-panel violin plots (#1552)
- Docs
- Python not yet supported