scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- meta: rank_genes_groups rework
- `pp.select_features`: scalable feature selection for non-transcriptomic data (+ robust scaling)
- feat: add multiplex support to tl.leiden
- feat: add graspologic flavor to tl.leiden
- fix(tools): raise when filter_rank_genes_groups genes are missing from adata
- fix: resolve CellBrowser color paths for relative exports
- refactor!: remove legacy preprocessing recipes
- feat: use the modern UMAP transform pipeline in ingest
- fix: resolve scatter embedding keys consistently
- style: switch to panache Markdown formatting
- Docs
- Python not yet supported