scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- Dotplot color annotation
- How can I delete or rotate the legend of `sc.pl.stacked_violin`?
- Notebooks on readthedocs
- Simpler gene annotations in plotting functions
- outlier detection in scanpy?
- Import performance part 3
- sc.pp.calculate_qc_metrics Runtime Error
- Uns categorical colour maping as a dictionary
- STARsolo Matrix with Velocyto --> Anndata function
- KeyError: 1 in read_10x_mtx if genes.tsv has only one column
- Docs
- Python not yet supported