scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported1 Subscribers
Add a CodeTriage badge to scanpy
Help out
- Issues
- Reproducibility with normalize_total
- dotplot cannot set gene_symbols
- pp.neighbors returns edgeless graph for n_neighbors=1
- What does y-axis in differential gene expression plot signify?
- Common plotting library for the Scanpy ecosystem
- Public function for accessing category colors
- gex_only=True defaults in sc.read_10x_h5
- sc.pp.combat runtime/out of memory
- allowing dotplot to use two variables in groupby as x and y axis
- rank_genes_groups_dotplot does not work when using reference and using rankby_abs, or setting; values_to_plot='logfoldchanges'
- Docs
- Python not yet supported