scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported1 Subscribers
Add a CodeTriage badge to scanpy
Help out
- Issues
- Add sanitize to score_genes
- ScanPy's BSD license and GPLed dependencies
- Plotting colors from obsm
- ~ 35.63% faster filtering
- faster reading of h5ad file (~18X faster)
- Nan values after running sc.tl.filter_rank_genes_groups and plotting
- "Interactive" Dotplot version: check for available var_names
- Allow both 'on data' legend together with legend on righ-hand side of plot
- tl.sim ignores additional parameters
- Rethink group IDs in rank_genes_groups
- Docs
- Python not yet supported