scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- Regress out
- > [Bug] `rank_genes_groups` after `normalize_pearson_residuals`
- Fix rank_genes_groups_violin’s gene_symbols
- sc.pp.highly_variable_genes produces different hvg when run on same object with same n_genes
- scanpy.external.pp.dca results still need normolize,scale,and log1p ?
- An advice for color palette in adata.uns
- Potential error in scanpy.tl.rank_genes_groups?
- Can't implicitly convert non-string objects to strings. Bug about tl.filter_rank_genes_groups and tl.rank_genes_groups
- n_components parameter for sc.tl.tsne
- change location of add_totals values for sc.pl.dotplot
- Docs
- Python not yet supported