scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- Implementation of `sc.tl.score_genes` doesn't match reference
- Add values_to_plot support to matrixplot and heatmap (issue #3842)
- chore(deps): bump actions/upload-artifact from 5 to 6
- chore(deps): bump actions/cache from 4 to 5
- Recommended order for sc.pp.filter_genes and sc.pp.normalize_total in preprocessing pipeline
- Update template to v0.7.0
- [Bug] Kernel crash using harmony
- docs: add inline example of pca_variance_ratio
- Add Harmony to scanpy
- feat: presets
- Docs
- Python not yet supported