scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported1 Subscribers
Add a CodeTriage badge to scanpy
Help out
- Issues
- tests for sc.pl.diffmap and sc.pl.rank_genes_groups
- Inconsistency of `basis` argument in plotting functions
- Custom neighbor transformers with varying neighbor count and respect `knn`
- Implementation of `sc.tl.score_genes` doesn't match reference
- Add values_to_plot support to matrixplot and heatmap (issue #3842)
- chore(deps): bump actions/upload-artifact from 5 to 6
- chore(deps): bump actions/cache from 4 to 5
- Fix: removed unecessary warning when a file name comprises multiple dots (closes #3899)
- Recommended order for sc.pp.filter_genes and sc.pp.normalize_total in preprocessing pipeline
- Update template to v0.7.0
- Docs
- Python not yet supported