scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- feat: add networkit flavor for parallel Leiden clustering
- feat(preprocessing): add optimal shifted CLR (PFlog1pPF) normalization
- ci: bump codecov/codecov-action from 6 to 7
- fix(experimental.pp.hvg): scope per-batch clip threshold in pearson_residuals HVG
- fix: anchor sc.pl.scatter colorbar to user-supplied ax
- feat: allow precomputed connectivities in neighbors
- Investigate our neighbors algorithm choice
- wilcoxon DE, vs_all_perturbed
- Investigate `networkit` (for `leiden` implementation)
- add backends
- Docs
- Python not yet supported