scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- feat: Add ncols parameter to pl.paga
- Split up rank_genes_groups and highly_variable_genes
- docs: document norm parameter for embedding scatter plots
- feat: support acc shortcuts
- pp.regress_out returns wrong residuals when a covariate barely varies
- Update template to v0.8.0
- feat: pp.scale allow selecting correction
- feat: add min_cells parameter to dotplot
- feat: add Array API support via array-api-compat
- feat: add networkit flavor for parallel Leiden clustering
- Docs
- Python not yet supported