scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- feature request for embedding_density()
- Inconsistent results from arpack pca implementation using VMs with different numbers of cpus
- Scale
- DensMAP support
- RuntimeError: libpng signaled error
- Subsample by observations grouping
- sc.pl.paga
- Switch t-SNE in scanpy to openTSNE
- Fix diffmap plotting
- subsetting isn't working after updating scanpy
- Docs
- Python not yet supported