scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- feature request: double legend position in sc.pl.umap
- Bug in diffusion map plotting in 1.9.1?
- add `mask_obs`/`mask_var` arguments where appropriate
- Fix diffmap plotting
- Plotting functions documentation issues
- scipy.spatial.sKDTree does not have a keyword argument 'n_jobs'
- Generalize tl.dendrogram function to either axis
- Benchmarks: Add all from Dask tutorial
- sc.get.aggregate summary statistics
- scanpy.api.tl.pca compensate for few genes < 50 but not few cells.
- Docs
- Python not yet supported