scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- Add neighbors_from_distance for computing neighborhood graphs from precomputed distance matrices
- Draft PR: Add modularity and modularity_adata functions to scanpy.metrics
- Refactored scanpy.tools._sparse_nanmean to eliminate unnecessary data…
- Add cluster_resolution_finder and cluster_decision_tree for help deciding the proper resolution
- Docs
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