scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- Add cluster_resolution_finder and cluster_decision_tree for help deciding the proper resolution
- [Question]: Usage of Graph Algorithms and Any Slowdowns?
- Add support for backed mode in calculate_qc_metrics
- Faster filtering of sparce matrix
- missing var_names in BasePlot
- feature selection method using pearson residuals discrepancies
- Find gene symbols exist only in .raw attribute
- Implement sc.get.summarized_expression_df
- Inline example plots in docs
- `sc.external.pp.magic`: what is `n_jobs`'s default _really_?
- Docs
- Python not yet supported