scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- fix: reorder pts/pts_rest to match significance ranking in rank_genes_groups
- Add `layer` argument to `filter_rank_genes_groups()`
- Integration Testing CI Test Failure on python 3.12
- fix: raise ValueError when combat batch has fewer than 2 cells
- Integration Testing CI Test Failure on python 3.13 with prerelease dependencies
- Violin plots - violins squished, points misaligned
- feat: support np.random.Generator
- Docs
- Python not yet supported