scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- chore!: remove `use_highly_variable`
- fix: copy size array before reorder in multi-color scatter plots
- feat: add `illico`for `rank_genes_groups`
- Per-point size array is cumulatively reordered across multi-color subplots
- fix: avoid cumulative size reordering across multi-color subplots
- Integration with `illico`
- perf: "two-pass" seurat hvg via `scanpy.get.aggregate`
- `anndata.acc` based API
- Opinionated defaults for 2.0
- perf: parallel downsample
- Docs
- Python not yet supported