scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported1 Subscribers
Add a CodeTriage badge to scanpy
Help out
- Issues
- performance optimization of stats code for rank_genes_groups
- Zb/illico threads
- docs: Remove duplicated 'layer' parameter from PCA documentation
- feat: Allow using accessors in `sc.get.aggregate`
- docs(pp.scale): document that variance/std use ddof=1 (sample correction)
- feat: new holoviz plotting
- Add Array API support via array-api-compat
- Adding "networkit" flavour to scanpy.tl.leiden for parallel community detection
- feat(preprocessing): add optimal shifted CLR (PFlog1pPF) normalization
- ci: bump codecov/codecov-action from 6 to 7
- Docs
- Python not yet supported