scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
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- Issues
- Integration Testing CI Test Failure on python 3.14
- Integration Testing CI Test Failure on python 3.12
- test: simpler plot fixtures
- feat: update and speedup harmony
- fix: numba jit issue
- UnboundLocalError in normalize_total when Numba JIT is disabled
- Update template to v0.8.0
- feat: pp.scale allow selecting correction
- feat: add min_cells parameter to dotplot
- Support dictionaries for Boolean colors in 'adata.uns'
- Docs
- Python not yet supported