moscot
https://github.com/theislab/moscot
Python
Multi-omic single-cell optimal transport tools
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- Issues
- remove generic types
- symbol column key argument when using gene sets
- center scale for spatial normalization callback
- Full rank initializers
- add tqdm in sparsification
- Add examples for advanced data passing, e.g. how to pass `x_attr/y_attr`
- Refactor: Check if both x and x_callback is given
- Pull/push in a batch-wise fashion
- Unbalance FGW full rank marginal normalization issue
- Neural Updates: PolicyDataLoader replaced with the old dataloading scheme and Quad terms added
- Docs
- Python not yet supported