moscot
https://github.com/theislab/moscot
Python
Multi-omic single-cell optimal transport tools
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- Issues
- Better tutorial/example structure
- Fix tests
- Simplify/improve typing
- Add names of base methods in corresponding problem classes
- get same output when pulling/pushing a vector on problem level or solution level
- Make resolution of sankey strips a variable
- Batch-wise computation of gene imputation.
- Unify the way `push/pull` results are saved.
- Jit the `apply` function
- Add `.copy` method
- Docs
- Python not yet supported