trinityrnaseq
https://github.com/trinityrnaseq/trinityrnaseq
Perl
Trinity RNA-Seq de novo transcriptome assembly
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Help out
- Issues
- Assembly stalled at Inchworm.
- jellyfish error
- recursive_trinity.cmds error
- Alternative Splice Transcripts/ Repeat Element Inserts
- stop without error
- error while running trinity
- Salmon error and --samples_file specification
- Trinity de novo assembly of fusion transcripts
- Issue with jellyfish under bioconda
- Error, no TPM value specified for transcript [TRINITY_DN0_c0_g1_i11] of gene [TRINITY_DN0_c0_g1] for sample 5_gene_count at /opt/software/Trinity/2.15.1-foss-2022a/trinityrnaseq-v2.15.1/util/abundance_estimates_to_matrix.pl line 323.
- Docs
- Perl not yet supported