prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
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- Issues
- Include more info from minced in the CRISPR annotations
- Add support for tRNAscan instead of aragorn
- Use indexed BLAST DB if already exists
- How to disable Excluding CDS which overlaps existing RNA
- no /pseudo gene in prokka-genbank_to_fasta_db
- URLs for MAXCONTIGIDLEN limit
- rRNA (partial) predicted by Barrnap
- Mitochondrial mode for plants
- Please rename your contigs or use --centre XXX to generate clean contig names
- Adding support for partial genes
- Docs
- Perl not yet supported