prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
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Help out
- Issues
- Allow --proteins to take an existing indexed BLAST database
- Use dustmasker to annotate low complexity regions
- Remove XML::Simple dependency
- How to update HMM databases
- Use GNU-parallel to run prodigal faster
- Add information about plasmid annotation
- Remove Time::Piece dependency
- Added a --check option to test dependencies to prokka and report
- check if input file is compressed (gziped/bzip2ed) and open accordingly
- Fixes #180 : Use Glimmer input file instead of embedded call to Prodigal
- Docs
- Perl not yet supported