prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
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- Issues
- bioperl v1.7.8 kills the prokka πΏπ«
- gene in faa and ffn starts with different amino acid.
- rna and CDS overlapped with no --cdsrnaolap set
- Update Core Database
- conda version update
- Conda installation problem
- Prokka runing error: Could not run command: cat, parallel, blastp
- format issue with gff files
- where is contigs.fa
- Prokka annotated gene-protein database
- Docs
- Perl not yet supported