prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
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- Issues
- Fails at blast step?
- Incorrect annotations from custom database
- initialization of Vm error
- prokka stalls on tbl2asn step + solved fix
- ncRNA prediction does not work
- prokka download issue
- Continue interrupted prokka run
- inference using ISFinder fails NCBI submission
- Prokka contigs too long
- check blast version fails due to v2.10 which is recognized as <2.2
- Docs
- Perl not yet supported