scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported1 Subscribers
Add a CodeTriage badge to scanpy
Help out
- Issues
- Spin off read/write into it's own package?
- Scanpy Clustering
- Jackstraw implementation in scanpy?
- gene co-expression networks
- Returning cluster assignments as str conflicts with matplotlib color sequences
- Generate BioContainer images
- Dotplot where sizes are proportional to p-value and the color to log2-fold change?
- leiden and umap not reproducible on different CPUs
- Interest in HTO/ADT demultiplexing and analysis?
- support for weighted sampled data to rank genes and plot (dot, violin…
- Docs
- Python not yet supported