scanpy
https://github.com/scverse/scanpy
Python
Single-cell analysis in Python. Scales to >1M cells.
Triage Issues!
When you volunteer to triage issues, you'll receive an email each day with a link to an open issue that needs help in this project. You'll also receive instructions on how to triage issues.
Triage Docs!
Receive a documented method or class from your favorite GitHub repos in your inbox every day. If you're really pro, receive undocumented methods or classes and supercharge your commit history.
Python not yet supported1 Subscribers
Add a CodeTriage badge to scanpy
Help out
- Issues
- Improve documentation for violin plot to illustrate per-gene usage – violin(adata.T, 'gene_property')
- Investigate Dask for speeding up Zheng17
- t-SNE optimization using scikit-learn-intelex
- Introduce GLM-PCA to scanpy.external
- Reading 10x scRNA-seq with read_10x_mtx()
- diffxpy integration
- UMAP is unreproducible between 3 Windows PCs
- LoweringError: Failed in nopython mode pipeline (step: nopython mode backend)
- Function `plot_scatter` is breaking with matplotlib
- Use graph coloring algorithm for a “world map” avoiding to color neighboring clusters in the same color
- Docs
- Python not yet supported