moscot
https://github.com/theislab/moscot
Python
Multi-omic single-cell optimal transport tools
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- Issues
- Memory-bounded sparsify + per-row mass mode
- ott-jax incompatible with JAX >= 0.9 (is_vmappable removed) — online/batched OT broken
- Incorporating Biological Priors and integrating multiple dataset
- Issue with Proportional Splitting in Sankey Diagram for RunX1ko Genotype Using MOSCOT
- Interpolation with moscot
- BirthDeathProblem.solve Error: tp1[8, 9].set_graph_xy(dfs[8, 9].astype("float"), t=100.0)
- [pre-commit.ci] pre-commit autoupdate
- Improve generating/saving regression test files
- Push/pull plotting when no categories are passed fails
- Conventional commits/release notes
- Docs
- Python not yet supported