prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
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- Issues
- Installation instruction for HMM databases
- Generating files with original fasta headers
- Proper /inference when --proteins has gi/gb/ref ID
- Accept Glimmer predictions file instead of running Prodigal
- prokka mitochondrial annotation
- Include more info from minced in the CRISPR annotations
- Add support for tRNAscan instead of aragorn
- Use indexed BLAST DB if already exists
- How to disable Excluding CDS which overlaps existing RNA
- no /pseudo gene in prokka-genbank_to_fasta_db
- Docs
- Perl not yet supported