prokka
https://github.com/tseemann/prokka
Perl
:zap: :aquarius: Rapid prokaryotic genome annotation
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- Issues
- prokka-hamap_to_hmm fails now due to changed dist format
- Add if a gene is a partial hit and if it is on contig ends?
- Keep original contig name
- Selenocysteine aminoacids converted to stop codons
- Added support for partial genes prokka-1.12
- Added support for partial genes prokka-1.12
- Add unique header to prokka annotation stats file
- Multiple EC_number tags for CDSs, lower case initials in /product descriptions for prokka-1.9.1-testing
- preserve contig names with --centre/--compliant
- Metagenomics (many samples): Prokka as input to GhostKOALA
- Docs
- Perl not yet supported